Soil Plant Research Articles

Soil microbiota and herbivory drive the assembly of tomato plant-associated microbial communities through different mechanisms

Plant-associated microbial communities are key to shaping many aspects of plant biology. In this study, we tested whether soil microbial communities and herbivory influence the bacterial community of tomato plants and whether their influence in different plant compartments is driven by microbial spillover between compartments or whether plants are involved in mediating this effect. We grew our plants in soils hosting three different microbial communities and covered (or not) the soil surface to prevent (or allow) passive microbial spillover between compartments, and we exposed them (or not) to herbivory by Manduca sexta. Here we show that the soil-driven effect on aboveground compartments is consistently detected regardless of soil coverage, whereas soil cover influences the herbivore-driven effect on belowground microbiota. Together, our results suggest that the soil microbiota influences aboveground plant and insect microbial communities via changes in plant metabolism and physiology or by sharing microorganisms via xylem sap. In contrast, herbivores influence the belowground plant microbiota via a combination of microbial spillover and changes in plant metabolism. These results demonstrate the important role of plants in linking aboveground and belowground microbiota, and can foster further research on soil microbiota manipulation for sustainable pest management.

The Effect of Saltwater Stress on the Performance of Cherry Tomatoes

Rising sea levels and saltwater intrusion in aquifers pose significant challenges for South Florida agriculture, leading to increased groundwater salinity and potential crop losses. Utilizing salttolerant crop species presents a potential solution for saline soils and regions with active saltwater intrusion. However, the effects of soil salinization through groundwater alone remains less studied. This research investigates the impact of short-term, below-ground saltwater stress on the growth, survival, and overall health of commonly grown cherry tomatoes (Solanum lycopersicum). The objectives of the study are to: 1) determine the impact of saline groundwater on tomato plant health and 2) compare the nutrient content of soil and tomato plant tissue exposed to varying concentrations of saline water. Established cherry tomato plants were exposed to varying concentrations of NaCl solution, simulating saltwater intrusion into groundwater. Over 28 days, plant height, leaf chlorophyll levels, and disease occurrences were monitored. It was found that the NaCl treatments did not significantly affect cherry tomato performance under the parameters of height, chlorophyll levels, or leaf nutrition when compared to the control group. This study suggests that cherry tomatoes can tolerate short-term exposure to NaCl in groundwater. Further exploration of more intense salt stress conditions from groundwater could be beneficial for utilizing this crop in areas with saline soils or polluted groundwater. Identification of salt-tolerant cherry tomato varieties can provide alternative crop options for non-arable land affected by high soil salinity.

Effect of Irrigation Water Quality and Soil Compost Treatment on Salinity Management to Improve Soil Health and Plant Yield

Increasing soil salinity and degraded irrigation water quality are major challenges for agriculture. This study investigated the effects of irrigation water quality and incorporating compost (3% dry mass in soil) on minimizing soil salinization and promoting sustainable cropping systems. A greenhouse study used brackish water (electrical conductivity of 2010 µS/cm) and agricultural water (792 µS/cm) to irrigate Dundale pea and clay loam soil. Compost treatment enhanced soil water retention with soil moisture content above 0.280 m3/m3, increased plant carbon assimilation by ~30%, improved plant growth by >50%, and reduced NO3− leaching from the soil by 16% and 23.5% for agricultural and brackish water irrigation, respectively. Compared to no compost treatment, the compost-incorporated soil irrigated with brackish water showed the highest plant growth by increasing plant fresh weight by 64%, dry weight by 50%, root length by 121%, and plant height by 16%. Compost treatment reduced soil sodicity during brackish water irrigation by promoting the leaching of Cl− and Na+ from the soil. Compost treatment provides an environmentally sustainable approach to managing soil salinity, remediating the impact of brackish water irrigation, improving soil organic matter, enhancing the availability of water and nutrients to plants, and increasing plant growth and carbon sequestration potential.

Soil microbial identity explains home-field advantage for litter decomposition.

Unraveling the mechanisms of home-field advantage (HFA) is essential to gain a complete understanding of litter decomposition processes. However, knowledge of the relationships between HFA effects and microbial communities is lacking. To examine HFA effects on litter decomposition, we identified the microbial communities and conducted a reciprocal transplant experiment, including all possible combinations of soil and litter, between sites at two elevations in cool-temperate forests. Soil origin, rather than HFA, was an important factor in controlling litter decomposition processes. Microbiome-wide association analyses identified litter fungi and bacteria specific to the source soil, which completely differed at a low taxonomic level between litter types. The relative abundance of these microbes specific to source soil was positively correlated with litter mass loss. The results indicated that the unique relationships between plant litter and soil microbes through plant-soil linkages drive litter decomposition processes. In the short term, soil disturbances resulting from land-use changes have the potential to disrupt the effect of soil origin and hinder the advancement of litter decomposition. These findings contribute to an understanding of HFA mechanisms and the impacts of land-use change on decomposition processes in forest ecosystems.

Distribution characteristics and investigation evaluation of ammonia nitrogen in the soil and groundwater of a chemical plant

ABSTRACT In this study, we analyzed the distribution characteristics of ammonia nitrogen, and evaluated the pollution status of the soil and groundwater in this legacy site. The results revealed that the concentration of ammonia nitrogen in the soil ranged from 2.36 to 32.7 mg/kg, and the areas with higher ammonia nitrogen concentration were the compression workshop, conversion workshop, sewage treatment area, and slag yard, the concentration of ammonia nitrogen in these areas ranged from 10.1 to 32.7 mg/kg. The groundwater ammonia nitrogen concentration ranged from 0.04 to 1.47 mg/L, the average value was 0.526 mg/L. Soil and groundwater ammonia nitrogen pollution in the plant area was mainly attributed to the node leakage of waste water pipes, and the investigation and evaluation results revealed that the soil test results of this site are consistent with the corresponding screening values. As the groundwater in this site is not used for drinking and other purposes, its risk to human health is considered acceptable. The detection indicators of groundwater in some plots exceed the Class III or IV standards, so long-term monitoring and retrospective risk assessment are the focus of future risk management and control of the plots.

Antibacterial activity of high surface area zinc oxide nanoparticles for controlling black rot disease of Chinese kale

AbstractZinc oxide nanoparticles (ZnO NPs) are inorganic compounds listed as “generally recognized as safe” (GRAS) materials and have been used in plant production as well as for plant disease control. This study investigated the antibacterial efficacy of ZnO NPs with various surface areas against Xanthomonas campestris pv. campestris, assessed the effectiveness of ZnO NPs in controlling black rot disease in Chinese kale, and examined the influence of ZnO NPs application on soil bacterial communities. The results showed that ZnO NPs with high surface area effectively inhibited X. campestris pv. campestris by restraining growth and causing cell damage. Seed treatment and foliar spray application of high surface area ZnO NPs at 250 μg/mL significantly reduced the disease severity of black rot. Furthermore, in the greenhouse experiment, the soil bacterial communities in the treatment of plants applied with ZnO NPs did not differ from those in soil of nontreated plants. Therefore, ZnO NPs have the potential to serve as an alternative substance for plant disease management.

Divergent Aspergillus flavus corn population is composed of prolific conidium producers: Implications for saprophytic disease cycle

ABSTRACT The ascomycete fungus Aspergillus flavus infects and contaminates corn, peanuts, cottonseed, and tree nuts with toxic and carcinogenic aflatoxins. Subdivision between soil and host plant populations suggests that certain A. flavus strains are specialized to infect peanut, cotton, and corn despite having a broad host range. In this study, the ability of strains isolated from corn and/or soil in 11 Louisiana fields to produce conidia (field inoculum and male gamete) and sclerotia (resting bodies and female gamete) was assessed and compared with genotypic single-nucleotide polymorphism (SNP) differences between whole genomes. Corn strains produced upward of 47× more conidia than strains restricted to soil. Conversely, corn strains produced as much as 3000× fewer sclerotia than soil strains. Aspergillus flavus strains, typified by sclerotium diameter (small S-strains, <400 μm; large L-strains, >400 μm), belonged to separate clades. Several strains produced a mixture (M) of S and L sclerotia, and an intermediate number of conidia and sclerotia, compared with typical S-strains (minimal conidia, copious sclerotia) and L-strains (copious conidia, minimal sclerotia). They also belonged to a unique phylogenetic mixed (M) clade. Migration from soil to corn positively correlated with conidium production and negatively correlated with sclerotium production. Genetic differences correlated with differences in conidium and sclerotium production. Opposite skews in female (sclerotia) or male (conidia) gametic production by soil or corn strains, respectively, resulted in reduced effective breeding population sizes when comparing male:female gamete ratio with mating type distribution. Combining both soil and corn populations increased the effective breeding population, presumably due to contribution of male gametes from corn, which fertilize sclerotia on the soil surface. Incongruencies between aflatoxin clusters, strain morphotype designation, and whole genome phylogenies suggest a history of sexual reproduction within this Louisiana population, demonstrating the importance of conidium production, as infectious propagules and as fertilizers of the A. flavus soil population.

Migration Patterns and Potential Risk Assessment of Trace Elements in the Soil–Plant System in the Production Area of the Chinese Medicinal Herb Scrophularia ningpoensis Hemsl.

Scrophularia ningpoensis Hemsl. holds a prominent place among Chinese medicinal herbs. Assessing the soil–plant system of its origin is crucial for ensuring medication safety. Although some trace elements are essential for the normal functioning of living organisms, exposure to higher concentrations is harmful to humans, so in order to assess the possible health risk of trace elements in the soil–plant system of Scrophularia ningpoensis Hemsl. origin for human assessment, we used non-carcinogenic risk (HI) and carcinogenic risk (CR) for their evaluation. In this paper, the following trace elements were studied in the soil–Scrophularia ningpoensis Hemsl. system: manganese (Mn), iron (Fe), cobalt (Co), zinc (Zn), selenium (Se), molybdenum (Mo), arsenic (As) and lead (Pb). Correlation and structural equation analyses showed that the effect of soil in the root zone on the plant was much greater than the effect of soil in the non-root zone on the plant. The single-factor pollution index (Pi) showed that the soil in the production area of Scrophularia ningpoensis Hemsl. was polluted to a certain extent, notably with Pb showing the highest average Pi values of 0.94 and 0.89 in the non-root and root zones, respectively. Additionally, the Nemerow composite pollution indices (PN) for both zones indicated an alert range. Regarding health risks, exposure to soil in the non-root zone posed higher non-carcinogenic risk (HI) and carcinogenic risk (CR) compared to the root zone, although neither zone presented a significant carcinogenic risk. The potential non-carcinogenic risk (HI) and carcinogenic risk (CR) from consuming Scrophularia ningpoensis Hemsl. leaves and stems were more than ten times higher than that of roots. However, the carcinogenic risk (CR) values for both the soil and plant of interest in the soil– Scrophularia ningpoensis Hemsl. system did not exceed 10−4, and therefore no significant carcinogenic risk existed.

Effect of plant-soil system on the restoration of community stability after wildfire in the northeast margin of Qinghai-Tibet plateau

Wildfires, as an environmental filter, are pivotal ecological disturbances that reshape plant communities and soil dynamics, playing a crucial role in regulating biogeographic patterns and ecosystem services. In this study, we aim to explore the effects of wildfires on forest ecosystems, specifically focusing on the plant-soil feedback mechanisms within the northeastern margin of the Qinghai-Tibet Plateau (QTP). Utilizing Partial Least Squares Path Modeling (PLS-PM), we investigated the interrelationships among soil physicochemical properties, enzyme activities, species diversity, and community stability at varying post-fire recovery stages (5, 15, and 23 years). Results indicated that in the early recovery stages, rapid changes in soil properties such as decreased pH (p < 0.001) and increased nutrient availability facilitate the emergence of early successional species with high resource utilization traits. As the ecosystem evolved toward a climax community, the soil and vegetation exhibit increased stability. Furthermore, soil enzyme activities displayed dynamic patterns that corresponded with changes in soil nutrient content, directly influencing the regeneration and diversity of plant communities. Importantly, our study documented a transition in the influence of soil properties on community stability from direct positive effects in initial recovery phases to negative impacts in later stages, while indirect benefits accrue through increased species diversity and enzyme activity. Vegetation composition and structure changed dynamically with recovery time during community succession. Plant nutrient absorption and accumulation affected nutrient dynamics in the soil, influencing plant regeneration, distribution, and diversity. Our results underscore the complex interactions between soil and vegetation that drive the recovery dynamics post-wildfire, highlighting the resilience of forest ecosystems to fire disturbances. This study contributes to the understanding of post-fire recovery processes and offers valuable insights for the management and restoration of fire-affected forest ecosystems.

Improving crop salt tolerance through soil legacy effects

Soil salinization poses a critical problem, adversely affecting plant development and sustainable agriculture. Plants can produce soil legacy effects through interactions with the soil environments. Salt tolerance of plants in saline soils is not only determined by their own stress tolerance but is also closely related to soil legacy effects. Creating positive soil legacy effects for crops, thereby alleviating crop salt stress, presents a new perspective for improving soil conditions and increasing productivity in saline farmlands. Firstly, the formation and role of soil legacy effects in natural ecosystems are summarized. Then, the processes by which plants and soil microbial assistance respond to salt stress are outlined, as well as the potential soil legacy effects they may produce. Using this as a foundation, proposed the application of salt tolerance mechanisms related to soil legacy effects in natural ecosystems to saline farmlands production. One aspect involves leveraging the soil legacy effects created by plants to cope with salt stress, including the direct use of halophytes and salt-tolerant crops and the design of cropping patterns with the specific crop functional groups. Another aspect focuses on the utilization of soil legacy effects created synergistically by soil microorganisms. This includes the inoculation of specific strains, functional microbiota, entire soil which legacy with beneficial microorganisms and tolerant substances, as well as the application of novel technologies such as direct use of rhizosphere secretions or microbial transmission mechanisms. These approaches capitalize on the characteristics of beneficial microorganisms to help crops against salinity. Consequently, we concluded that by the screening suitable salt-tolerant crops, the development rational cropping patterns, and the inoculation of safe functional soils, positive soil legacy effects could be created to enhance crop salt tolerance. It could also improve the practical significance of soil legacy effects in the application of saline farmlands.

Seedling Emergence and Growth Can Be Improved by Char Carbon Created During Thermal Treatment of Petroleum-Impacted Soils

ABSTRACT Thermal treatment of soils to remove petroleum hydrocarbons alters soil properties in ways that limit germination potential for plants used in revegetation efforts. However, recent studies have shown that a char material with the potential to offset fertility-reducing effects is produced by the pyrolysis of hydrocarbons during treatment. In this study, seedling emergence and growth (14 days) of two plant species, soybean (Glycine max) and oat (Avena sativa), were evaluated in four soils of contrasting properties treated with 5% (by mass) oil addition and two levels of salt addition. Three temperatures (300, 425, and 550°C) of thermal desorption (TD) and one smolder remediation approach were employed to remove the oil prior to planting. Results indicate that seedling response to temperature of thermal treatment and salt addition is dependent both upon plant species and soil properties. Higher temperatures were necessary to remove crude oil to levels low enough to allow germination. The smoldering approach did not remove enough oil to allow germination. This is the first study to show that early shoot mass and root mass are improved following TD treatment compared with an untreated control under certain conditions. The outcomes will be valuable for designing TD treatments when revegetation is the goal.

Nutrients Status of Citrus Orchards of District Multan, Punjab, Pakistan

Citrus is important and leading fruit crops across Pakistan now facing the decline qualitatively and quantitatively which directly affecting the total production per unit area. The major reason for these changes seems to be improper fertilization of nutrients. In this regard, an experiment has been conducted on the citrus orchards of district Multan, to evaluate the present condition of nutrients in soil and citrus plants. The relationship between soil properties, available nutrients in soil, and plants were also investigated. In 24 orchards, the soil samples at three different soil depths (0-15cm, 15-30cm, 30-45 cm) with 4–6-month-old leaves of the plant were collected. In soils, the N (100%), P (50%), B (70.83%), Fe (16.67%) and Zn (33.33%) were deficient at upper soil layer (0-15cm). The deficiency of these nutrients decreases with increasing soil depth. The leaf analysis of citrus plants showed that there was a deficiency of N (70.83%), P (66.66%), K (12.5%), Zn (66.6%) and B (50%). Among soil properties, the pH is negatively and significantly related to N, P, Fe, and Mn, while CaCO3 and EC showed a negatively significant correlation to P and B respectively at upper soil layer. Organic matter was positive and significantly related to P and Cu at upper soil layer. The significant correlation between soil properties and nutrients decreases with increasing soil depth. The K and Fe in the soil are directly associated with increasing its contents in the leaf.

Combining features selection strategy and features fusion strategy for SPAD estimation of winter wheat based on UAV multispectral imagery

The Soil Plant Analysis Development (SPAD) is a vital index for evaluating crop nutritional status and serves as an essential parameter characterizing the reproductive growth status of winter wheat. Non-destructive and accurate monitorin3g of winter wheat SPAD plays a crucial role in guiding precise management of crop nutrition. In recent years, the spectral saturation problem occurring in the later stage of crop growth has become a major factor restricting the accuracy of SPAD estimation. Therefore, the purpose of this study is to use features selection strategy to optimize sensitive remote sensing information, combined with features fusion strategy to integrate multiple characteristic features, in order to improve the accuracy of estimating wheat SPAD. This study conducted field experiments of winter wheat with different varieties and nitrogen treatments, utilized UAV multispectral sensors to obtain canopy images of winter wheat during the heading, flowering, and late filling stages, extracted spectral features and texture features from multispectral images, and employed features selection strategy (Boruta and Recursive Feature Elimination) to prioritize sensitive remote sensing features. The features fusion strategy and the Support Vector Machine Regression algorithm are applied to construct the SPAD estimation model for winter wheat. The results showed that the spectral features of NIR band combined with other bands can fully capture the spectral differences of winter wheat SPAD during the reproductive growth stage, and texture features of the red and NIR band are more sensitive to SPAD. During the heading, flowering, and late filling stages, the stability and estimation accuracy of the SPAD model constructed using both features selection strategy and features fusion strategy are superior to models using only a single feature strategy or no strategy. The enhancement of model accuracy by this method becomes more significant, with the greatest improvement observed during the late filling stage, with R2 increasing by 0.092-0.202, root mean squared error (RMSE) decreasing by 0.076-4.916, and ratio of performance to deviation (RPD) increasing by 0.237-0.960. In conclusion, this method has excellent application potential in estimating SPAD during the later stages of crop growth, providing theoretical basis and technical support for precision nutrient management of field crops.

Response of Chinese cabbage (Brassica rapa subsp. pekinensis) to bacterial soft rot infection by change of soil microbial community in root zone

Chinese cabbage, scientifically known as Brassica rapa subsp. pekinensis, is a highly popular vegetable in China for its delectable taste. However, the occurrence of bacterial soft rot disease poses a significant threat to its growth and overall development. Consequently, this study aimed to explore the defense mechanisms employed by Chinese cabbage against bacterial soft rot disease. Specifically, the investigation focused on understanding the relationship between the disease and the microbial communities present in the soil surrounding the roots of Chinese cabbage. Significant disparities were observed in the composition of microbial communities present in the root-zone soil of healthy Chinese cabbage plants compared to those affected by Pectobacterium brasiliense-caused soft rot disease. The analysis of 16S rRNA gene high-throughput sequencing results revealed a lower abundance of Proteobacteria (8.39%), Acidobacteriot (0.85), Sphingomonas (3.51%), and Vicinamibacteraceae (1.48%), whereas Firmicutes (113.76%), Bacteroidota (8.71%), Chloroflexi (4.89%), Actinobacteriota (1.71%), A4b (15.52%), Vicinamibacterales (1.62%), and Gemmatimonadaceae (1.35%) were more prevalent in healthy plant soils. Similarly, the analysis of ITS gene high-throughput sequencing results indicated a reduced occurrence of Chytridiomycota (23.58%), Basidiomycota (21.80%), Plectosphaerella (86.22%), and Agaricomycetes (22.57%) in healthy soils. In comparison, Mortierellomycota (50.72%), Ascomycota (31.22%), Podospora (485.08%), and Mortierella (51.59%) were more abundant in healthy plant soils. In addition, a total of 15 bacterial strains were isolated from the root-zone soil of diseased Chinese cabbage plants. These isolated strains demonstrated the ability to fix nitrogen (with the exception of ZT20, ZT26, ZT41, ZT45, and ZT61), produce siderophores and indole acetic acid (IAA), and solubilize phosphate. Notably, ZT14 (Citrobacter freundii), ZT33 (Enterobacter cloacae), ZT41 (Myroides odoratimimus), ZT52 (Bacillus paramycoides), ZT58 (Klebsiella pasteurii), ZT45 (Klebsiella aerogenes), and ZT32 (Pseudomonas putida) exhibited significant growth-promoting effects as determined by the plant growth promotion (PGP) tests. Consequently, this investigation not only confirmed the presence of the soft rot pathogen in Chinese cabbage plants in Hangzhou, China, but also advanced our understanding of the defense mechanisms employed by Chinese cabbage to combat soft rot-induced stress. Additionally, it identified promising plant-growth-promoting microbes (PGPMs) that could be utilized in the future to enhance the Chinese cabbage industry.

Assessment of Plant Diversity and Soil Quality Management in Forest Land of West Godavari District, Andhra Pradesh, India

The field experiment was set in home-garden areas under forest land of eight small towns viz. Borampalem, Venkatapuram, Gundugolanukunta, Ramannapalem, Abdullapuram, Tirumaladevpeta, Venkatakrishnapuram, Appalarajugudem in West Godavari, Andhra Pradesh during November to March in 2021–22 assess the Plant and Tree Diversity and Soil quality parameters. The plant/tree species Phoenix sylvestris, reported the highest frequency (245.00), dominance (3.27), and basal area (7542.96 cm2). Plumbago zeylanica had the highest relative density (6.96) and relative abundance (6.81) among all the shrub species. Plumbago zeylanica reported the highest Important value index (IVI) 17.10 while Herb species with highest density was found in Centella asiatica (0.95), frequency (35), and highest Important value index (IVI) 14.60. Soil quality parameters reflects that at the depth 0-15cm the average value of pH is found to be7.52, organic carbon is 0.56%, the amount of available nitrogen is 213.78 kg/ha, amount of available of phosphorus is 41.25 kg/ha and available potassium is 38.22 kg/ha. At the depth of 15-30 cm the Average value of pH is found to be 6.61, organic carbon is 0.39%, the amount of available nitrogen is 189.51 kg/ha, amount of available of phosphorus is 34.75 kg/ha and available potassium is 31.37 kg/h.

Root exudate-mediated plant–microbiome interactions determine plant health during disease infection

Understanding the interactions between plants and microbes during pathogen infection is crucial for plant health improvement. However, the integrated role of soil nutrients, root exudates, and plant microbiomes in plant health during disease outbreaks remains unclear. In this study, we hypothesized that root exudate-mediated healthy microbiomes (HealthyBiome) would facilitate the escape of soil-borne pathogen infection, whereas a root exudate-mediated disease-conductive microbiome (PathoBiome) would induce disease occurrence. Using watermelon wilt disease caused by Fusarium oxysporum as a model, we investigated these interactions and their implications in plant disease. We examined the pathogen load across plant compartments during the pathogen accumulation (AH) and disease outbreak periods. We analyzed the plant microbiomes and root exudates during the outbreak, which was associated with the emergence in both healthy (BH) and diseased (BD) plants. Compared with AH and BD plants, BH plants had the lowest F. oxysporum density in the root–soil system (0.74–0.84 times that of AH and BD plants). BD plants showed an elevated amino acid metabolism (2.84–3.38 times that of healthy plants), whereas BH plants showed a higher metabolism of phenolic compounds (1.73 times that of diseased plants). BH plants secreted more palmitic acid (1.53 times that of diseased plants) and recruited more nitrogen (N)-fixing bacteria (e.g., Paenarthrobacter, Sphingomonas), which potentially alleviated N scarcity in the soil, promoted plant growth, and improved the plant defense. Structural equation modeling highlighted the interactions among soil nutrients, root metabolites, and plant nutrients in recruiting pro-growth bacteria to the rhizosphere and roots for healthy plant growth. Our findings provide novel evidence of how root exudates influence plant–microbiome interactions during pathogen infections, highlighting the importance of a balanced root exudate profile and its associated “HealthyBiome” in promoting plant health and growth.

Microbiological Mechanisms of Collaborative Remediation of Cadmium-Contaminated Soil with Bacillus cereus and Lawn Plants

Severe cadmium contamination poses a serious threat to food security and human health. Plant–microbial combined remediation represents a potential technique for reducing heavy metals in soil. The main objective of this study is to explore the remediation mechanism of cadmium-contaminated soil using a combined approach of lawn plants and microbes. The target bacterium Bacillus cereus was selected from cadmium-contaminated soil in mining areas, and two lawn plants (Festuca arundinacea A‘rid III’ and Poa pratensis M‘idnight II’) were chosen as the target plants. We investigated the remediation effect of different concentrations of bacterial solution on cadmium-contaminated soil using two lawn plants through pot experiments, as well as the impact on the soil microbial community structure. The results demonstrate that Bacillus cereus promotes plant growth, and the combined action of lawn plants and Bacillus cereus improves soil quality, enhancing the bioavailability of cadmium in the soil. At a bacterial suspension concentration of 105 CFU/mL, the optimal remediation treatment was observed. The removal efficiency of cadmium in the soil under Festuca arundinacea and Poa pratensis treatments reached 33.69% and 33.33%, respectively. Additionally, the content of bioavailable cadmium in the rhizosphere soil increased by up to 13.43% and 26.54%, respectively. Bacillus cereus increased the bacterial diversity in the non-rhizosphere soil of both lawn plants but reduced it in the rhizosphere soil. Additionally, the relative abundance of Actinobacteriota and Firmicutes, which have potential for heavy metal remediation, increased after the application of the bacterial solution. This study demonstrates that Bacillus cereus can enhance the potential of lawn plants to remediate cadmium-contaminated soil and reshape the microbial communities in both rhizosphere and non-rhizosphere soils.

Why are graminoid species more dominant? Trait‐mediated plant–soil feedbacks shape community composition

AbstractSpecies traits may determine plant interactions along with soil microbiome, further shaping plant–soil feedbacks (PSFs). However, how plant traits modulate PSFs and, consequently, the dominance of plant functional groups remains unclear. We used a combination of field surveys and a two‐phase PSF experiment to investigate whether forbs and graminoids differed in PSFs and in their trait–PSF associations. When grown in forb‐conditioned soils, forbs experienced stronger negative feedbacks, while graminoids experienced positive feedbacks. Graminoid‐conditioned soil resulted in neutral PSFs for both functional types. Forbs with thin roots and small seeds showed more‐negative PSFs than those with thick roots and large seeds. Conversely, graminoids with acquisitive root and leaf traits (i.e., thin roots and thin leaves) demonstrated greater positive PSFs than graminoids with thick roots and tough leaves. By distinguishing overall and soil biota‐mediated PSFs, we found that the associations between plant traits and PSFs within both functional groups were mainly mediated by soil biota. A simulation model demonstrated that such differences in PSFs could lead to a dominance of graminoids over forbs in natural plant communities, which might explain why graminoids dominate in grasslands. Our study provides new insights into the differentiation and adaptation of plant life‐history strategies under selection pressures imposed by soil biota.

Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities.

Most of Earth's trees rely on critical soil nutrients that ectomycorrhizal fungi (EcMF) liberate and provide, and all of Earth's land plants associate with bacteria that help them survive in nature. Yet, our understanding of how the presence of EcMF modifies soil bacterial communities, soil food webs, and root chemistry requires direct experimental evidence to comprehend the effects that EcMF may generate in the belowground plant microbiome. To this end, we grew Pinus muricata plants in soils that were either inoculated with EcMF and native forest bacterial communities or only native bacterial communities. We then profiled the soil bacterial communities, applied metabolomics and lipidomics, and linked omics data sets to understand how the presence of EcMF modifies belowground biogeochemistry, bacterial community structure, and their functional potential. We found that the presence of EcMF (i) enriches soil bacteria linked to enhanced plant growth in nature, (ii) alters the quantity and composition of lipid and non-lipid soil metabolites, and (iii) modifies plant root chemistry toward pathogen suppression, enzymatic conservation, and reactive oxygen species scavenging. Using this multi-omic approach, we therefore show that this widespread fungal symbiosis may be a common factor for structuring soil food webs.IMPORTANCEUnderstanding how soil microbes interact with one another and their host plant will help us combat the negative effects that climate change has on terrestrial ecosystems. Unfortunately, we lack a clear understanding of how the presence of ectomycorrhizal fungi (EcMF)-one of the most dominant soil microbial groups on Earth-shapes belowground organic resources and the composition of bacterial communities. To address this knowledge gap, we profiled lipid and non-lipid metabolites in soils and plant roots, characterized soil bacterial communities, and compared soils amended either with or without EcMF. Our results show that the presence of EcMF changes soil organic resource availability, impacts the proliferation of different bacterial communities (in terms of both type and potential function), and primes plant root chemistry for pathogen suppression and energy conservation. Our findings therefore provide much-needed insight into how two of the most dominant soil microbial groups interact with one another and with their host plant.

The Impact of Aboveground Epichloë Endophytic Fungi on the Rhizosphere Microbial Functions of the Host Melica transsilvanica

In nature, the symbiotic relationship between plants and microorganisms is crucial for ecosystem balance and plant growth. This study investigates the impact of Epichloë endophytic fungi, which are exclusively present aboveground, on the rhizosphere microbial functions of the host Melica transsilvanica. Using metagenomic methods, we analyzed the differences in microbial functional groups and functional genes in the rhizosphere soil between symbiotic (EI) and non-symbiotic (EF) plants. The results reveal that the presence of Epichloë altered the community structure of carbon and nitrogen cycling-related microbial populations in the host’s rhizosphere, significantly increasing the abundance of the genes (porA, porG, IDH1) involved in the rTCA cycle of the carbon fixation pathway, as well as the abundance of nxrAB genes related to nitrification in the nitrogen-cycling pathway. Furthermore, the presence of Epichloë reduces the enrichment of virulence factors in the host rhizosphere microbiome, while significantly increasing the accumulation of resistance genes against heavy metals such as Zn, Sb, and Pb. This study provides new insights into the interactions among endophytic fungi, host plants, and rhizosphere microorganisms, and offers potential applications for utilizing endophytic fungi resources to improve plant growth and soil health.